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Make the cupcakes:
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Preheat oven to 350ºF.
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Prep muffin tins by lining them with paper cupcake liners.
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Mix flours, cinnamon, baking powder and salt.
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In an electric stand mixer, beat butter and sugar together.
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Keeping mixer running, add eggs one at a time, beating until well mixed.
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Add vanilla to mixture.
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Add flour mixture 1 cup at a time, alternating with milk, beating until well incorporated.
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Fill each well of the muffin tin until it is 3/4 full.
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Bake for 20 minutes, checking for doneness with a toothpick or cake tester.
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Allow cupcakes to cool on wire racks until completely cooled.
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Make the topping:
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Place 4 Tablespoons of melted butter in a shallow bowl.
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Combine the 1/4 cup sugar and 1 teaspoon ground cinnamon in a shallow bowl.
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Dip cupcake tops in melted butter and then in cinnamon sugar mixture.
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Return cupcakes to wire racks.
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Make the frosting:
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In an electric stand mixer, beat 1/2 cup butter and 8 ounces cream cheese until fluffy.
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Add 1/2 teaspoon vanilla, and 1 teaspoon of cinnamon, beat until combined.
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Slowly add powdered sugar and beat until smooth.
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(Tip: Add water or milk a teaspoon at a time if frosting too thick)
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Frost cupcakes using a pastry bag and icing tip.
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Sprinkle with cinnamon.
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Refrigerate until 20 minutes before serving.